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At this month's ERGA Plenary meeting , on Monday, November 17 at 15:00 CET , Joana Paupério and Alexey Sokolov will present about Biodiversity Reference Genomes at ENA (European Nucleotide Archive) and the ERGA Data Portal . Check more information below. Abstract Reference Genomes produced under the European Reference Genome Atlas (ERGA) are being publicly shared through the European Nucleotide Archive ( ENA ) and are accessible through the ERGA Data Portal . The ENA is the European node of the International Nucleotide Sequence Database Collaboration (INSDC) that also includes the National Centre for Biotechnology Information (NCBI) and the DNA Data Bank of Japan (DDBJ). These sequence repositories support the archiving of this reference data and collaborate with the community providing resources for the management, sharing and dissemination of data to promote re-use. Here we will present the reference genome data structure at ENA and the service developments to support genomes open and FAIR (Findable, Accessible, Interoperable and Reusable) data sharing. These include the development of metadata standards with the community for reporting enriched source information and setting up the data structure for increased accessibility and interoperability. Enhancements have also been made to support the upscaling of submissions to ENA, considering the diversity of taxa and genome characteristics. A new model for handling annotation is being developed at the ENA, decoupling annotations from genome records themselves. Cross references to other data types and search services were improved to facilitate reference genome findability and access, with rich metadata to support the uptake in biodiversity research. The ERGA Data Portal (https://portal.erga-biodiversity.eu) provides a single open-access platform ensuring FAIR access to all genome data generated by ERGA. It integrates data and metadata from major international repositories—BioSamples, ENA, Ensembl, BioImage Archive, and Wellcome Open Research—together with cross-references to GoaT, TolQC, and the NBN Atlas. Automated pipelines built with Apache Airflow and Apache Beam continuously harmonise and update the integrated dataset around each unique species taxon. The web portal, built with Angular and FastAPI, offers intuitive search and filtering tools, species-level detail pages, status tracking, and a publications browser. Programmatic access is available through an open API, enabling integration with external tools such as Ensembl dashboards, Jupyter notebooks, and institutional analysis workflows. Analytical and visual layers, powered by BigQuery and Python Dash, provide interactive phylogenetic, geospatial, and metadata dashboards for data exploration. Together, these components create a sustainable and extensible infrastructure supporting ERGA’s mission to deliver high-quality genomic resources for European biodiversity and to promote open, data-driven research and conservation. Speakers Joana Paupério is a Biodiversity Project Manager at the European Nucleotide Archive (ENA, EMBL-EBI), where she is responsible for biodiversity data coordination. She works with the community, understands their needs, and supports data structuring and submission to the sequence archives. She is involved in a number of projects and initiatives working towards FAIR biodiversity genomics data and infrastructure linking. Joana is also co-lead of the ELIXIR Biodiversity Community. Alexey Sokolov is a project lead at EBI, where he is responsible for building scalable, FAIR-compliant data platforms for life-science research. He has contributed to the development of modern genomic data portals and cloud-based analytics ecosystems supporting large international consortia. His work centres on transforming complex, heterogeneous biological data into accessible, well-structured resources that enable researchers to generate new scientific insights. 🔔 To receive the Zoom link and join this and our upcoming plenary meetings, register as an ERGA member . ▶️ You can watch all previous ERGA Plenary talks here . If you would like to suggest a speaker or topic for a future plenary session, please contact us at training@erga-biodiversity.eu . We welcome your input!

The last few days of October marked the realization of a much-anticipated event: the Genomics for Biodiversity Conference , organized by   BGE and ERGA. Hosted by the BIOPOLIS/CIBIO Association  near Porto, Portugal, the conference was streamed live to a global audience, bringing together around 70 in-person participants and a similar number of remote attendees. In-person attendees, including most of the BGE case studies representatives. The conference marked the conclusion of BGE’s “ Genome Applications ” work package and had the goal to demonstrate the many different ways genomic science is being used to help address real-world issues, such as biodiversity conservation and the development of the bioeconomy. Importantly, the goal was to showcase genomic-informed actions that are already having an impact, rather than the potential applications of the data. The main highlight of the conference was the series of talks presenting projects (case studies) that have received support from BGE. In total, 27 case study leaders presented their results, outlined the methods used to achieve these results, discussed the relevance of their genomics insights in the policy context and described their efforts to share the newly generated knowledge with relevant stakeholders. The presentations sparked many interesting conversations that went beyond the scientific approach used by each project, addressing other important matters such as genomic outreach and how to best convert the results into actionable knowledge.  The programme also included an exciting line-up of four Keynote talks addressing the links between biodiversity genomics, policy, and society. You can (re)watch the keynote talks here . On the final day of the conference, parallel sessions and open discussions focused on the engagement of stakeholders in biodiversity genomics research and how the BGE case studies are influencing European conservation and bioeconomy policies. The closing session brought together speakers from the wider biodiversity genomics community, who presented their work in engaging 5-minute flash talks — an opportunity to explore the landscape of research beyond the BGE project and Europe. Overall, the conference was a lively event and offered a great opportunity for networking and strengthening connections between members of the European Reference Genome Atlas (ERGA) Community. As the BGE Case Studies come to a close, stay tuned — many exciting publications and other outputs are on the way! Photo gallery

29–31 October 2025 Summary 🗓️ Dates:  29 - 31 October 2025 ( click to add to your agenda! ) 🔗 Online venue: ERGA YouTube Channel Conference programme We are excited to announce the Genomics for Biodiversity Conference  organised by ERGA-BGE, which will be held on October 29 - 31 and transmitted live through the ERGA YouTube channel . Participation is free of charge. All sessions were recorded and are available in our Channel : The event aims to bring together researchers and other stakeholders interested in applied biodiversity genomics and will showcase how it can have an impact on real-world issues, focusing primarily on biodiversity conservation and the bioeconomy.   Programme Through two and a half days, the conference will include: Keynote talks  - addressing the links between biodiversity genomics, policy, and society. Check the list of keynote speakers below: Christina Hvilsom: Genomes in action for conservation Since 2008, I have build and led the genetic research profile and lab of Copenhagen Zoo managing a highly skilled and dedicated team focused on conservation genetics and population genomics. Over the years, I’ve built robust in-house expertise and international collaborations that advance science-based solutions for managing endangered species—both in the wild and in human care. My work combines genomic analyses with strategic conservation planning, supporting efforts from species recovery programs to global biodiversity policy. I’m proud to supervise students and researchers, foster interdisciplinary research, and contribute to high-impact networks and initiatives worldwide. As founder and chair of the EAZA Biobank, I help develop genetic resource infrastructures for over 450 zoos and aquaria. I also advise on population management through the European Association of Zoos and Aquaria (EAZA), support and build resources for global biodiversity efforts and strategies via the International Union for Conservation of Nature (IUCN), and coordinate the EU Biodiversa+ GINAMO project—working to integrate genetic indicators into EU and global biodiversity frameworks of the UN Convention on Biological Diversity (CBD). Passionate about uniting science, management, and policy, I actively contribute to initiatives like the EU COST Action Networks GENOA and G-BiKE, Coalition for Conservation Genetics and the IUCN SSC Conservation Genetics Specialist Group, ensuring genetic diversity has a voice in global conservation efforts. Alessio Iannucci: Integrating reference genomes and cytogenomics to support the design of wildlife management and conservation programs Dr. Alessio Iannucci, currently a research fellow at the University of Florence, studies the evolution and population dynamics of terrestrial vertebrate species using advanced genomic technologies. His PhD research focused on the Komodo dragon (Varanus komodoensis), for which he produced the first reference genome. His research includes the combination of classical cytogenetic methods with next-generation sequencing technologies. Pier Luigi Buttigieg: Omics in global data ecosystems: Forming a digital niche to scale the impact and use of reference genomes I'm a senior data scientist, digital architect, and strategist. My thematic foci are in ocean and biodiversity data (especially microbiome and biomolecular data), as well as their societal links. I contribute to the steering, strategy, and operations of multiple regional and international research data infrastructures and Actions within and related to the UN Decade of Ocean Science for Sustainable Development, including those addressing globally federated digital exchange and digital twinning. I also chair the Ocean Data and Information System Project of the Intergovernmental Oceanographic Commission (IOC) of UNESCO. My additional focal areas include digital strategy and architecture development, interoperability approaches, semantic harmonisation, knowledge representation, and high-dimensional data analysis. Alexandra A.-T. Weber : Genomics of sex determination in invasive quagga and zebra mussels: progress towards potential genetic biocontrol I am an evolutionary ecologist interested in understanding the molecular mechanisms generating and maintaining biodiversity in aquatic ecosystems. I use a wide range of -omics data (e.g. genomics, epigenomics, transcriptomics) from the field and experiments to uncover how organisms adapt to different environmental conditions, and ultimately infer their vulnerability and resilience in the face of rapid environmental changes. I mainly focus on native (e.g. Unionids) and invasive (e.g. quagga and zebra mussels; Asian clam) freshwater bivalve species in Switzerland to conduct my current research, but I also have collaborative projects on other aquatic invertebrates from various habitats (e.g. marine limpets; freshwater crustaceans). 29 Genomic for biodiversity projects presentations  - they will showcase the applied use of biodiversity genomics across Europe and a diverse set of eukaryotic species.  Click here to learn more about the projects. 3 sessions focusing on genomics applied to biodiversity conservation and standardisation. ERGA-BGE Case Studies The Biodiversity Genomics Europe Project and ERGA have supported 29 research projects that demonstrate the applications of genomic data to improve our understanding of biodiversity. In this conference, research project participants will have a chance to come together, share scientific results, and exchange experiences. Learn more about the projects in the interactive map below: Parallel sessions On Friday, 31 October 2025 at 12:30 CET three parallel breakout sessions on Conservation Genomics and Genomic Data Standardisation , will run concurrently. Each session will include selected flash talks on genomics‑driven study that fits one of the three themes and can be communicated clearly within a timed and visually engaging five‑minute presentation: Genomics for species monitoring and management - https://eu02web.zoom-x.de/j/69230801220 Genomics techniques for conservation - https://eu02web.zoom-x.de/j/69712802206 Standardization in genomics - https://eu02web.zoom-x.de/j/62675803112 The Biodiversity Genomics Europe ( BGE ) Project is funded by the European Union's Horizon Food, Bioeconomy Natural Resources, Agriculture and Environment Framework Programme Additional support:

Biodiversity Genomics Europe (BGE) The Biodiversity Genomics Europe Project has the overriding aim of accelerating the use of genomic science to enhance understanding of biodiversity, monitor biodiversity change, and guide interventions to address its decline. The BGE Project comprises activities focused on DNA Barcoding (Barcoding Stream) and Reference Genome Generation (Genomes Stream) for eukaryotic species across Europe, bringing together two European networks: iBOL Europe and the European Reference Genome Atlas (ERGA). The ERGA Stream of BGE The Genomes Stream of BGE, as the European node of the Earth BioGenome Project (EBP) , aims to establish and implement large-scale biodiversity genomic data generation pipelines to accelerate the production and accessibility of reference-quality, complete genome sequences for species across the whole of European biodiversity. The output will support applications in the fields of: biodiversity characterisation, conservation, and biomonitoring. The Genomes Stream focuses on generating reference-quality genomes from critical European biodiversity, biodiversity hotspots, pollinators, and a selection of applied case studies. BGE-ERGA Stream Work Packages: BGE-ERGA News Big data and small brown birds: how whole-genome sequencing can inform conservation of the threatened aquatic warbler? Genomic Connections #6 - The code of life: the world of bioinformatics Celebrating 100+ BGE genomes! Partner Institutions Leibniz Institute for Zoo and Wildlife Research University of Lausanne University of Florence Cibio Genomescope 6 7 8 600x600logos_hackathon_sponsors_logos2 bge_erga-inst_LOGOS(7) CSIC University of Oslo 14 16 bge_erga-inst_LOGOS(2) bge_erga-inst_LOGOS(3) Sanger Earlham Institute bge_erga-inst_LOGOS(5) bge_erga-inst_LOGOS(6) Discover the whole BGE network

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OUR PARTNER PROJECTS ERGA is the pan-European partner of the Earth Biogenome Project (EBP) Regional Partners: French Atlas of Marine Genomes (ATLASea) Earth Biogenome Project Norge (EBP-Nor) Swedish Earth BioGenome Project Worldwide Partners: